Multiple Phytophthora species associated with a single riparian ecosystem in South Africa.
Identifieur interne : 000D32 ( Main/Exploration ); précédent : 000D31; suivant : 000D33Multiple Phytophthora species associated with a single riparian ecosystem in South Africa.
Auteurs : Jan H. Nagel ; Bernard Slippers [Afrique du Sud] ; Michael J. Wingfield [Afrique du Sud] ; Marieka Gryzenhout [Afrique du Sud]Source :
- Mycologia [ 0027-5514 ]
Descripteurs français
- KwdFr :
- MESH :
- génétique : ADN fongique, ADN intergénique, Phytophthora.
- Phylogenèse, Rivières, République d'Afrique du Sud, Écosystème.
- Wicri :
- geographic : Afrique du Sud.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : DNA, Fungal, DNA, Intergenic.
- geographic : South Africa.
- classification : Phytophthora.
- genetics : Phytophthora.
- Ecosystem, Phylogeny, Rivers.
Abstract
The diversity of Phytophthora spp. in rivers and riparian ecosystems has received considerable international attention, although little such research has been conducted in South Africa. This study determined the diversity of Phytophthora spp. within a single river in Gauteng province of South Africa. Samples were collected over 1 y including biweekly river baiting with Rhododendron indicum leaves. Phytophthora isolates were identified with phylogenetic analyses of sequences for the internal transcribed spacer (ITS) region of the ribosomal DNA and the mitochondrial cytochrome oxidase c subunit I (coxI) gene. Eight Phytophthora spp. were identified, including a new taxon, P. taxon Sisulu-river, and two hybrid species from Cooke's ITS clade 6. Of these, species from Clade 6 were the most abundant, including P. chlamydospora and P. lacustris. Species residing in Clade 2 also were encountered, including P. multivora, P. plurivora and P. citrophthora. The detection of eight species in this investigation of Phytophthora diversity in a single riparian river ecosystem in northern South Africa adds to the known diversity of this genus in South Africa and globally.
DOI: 10.3852/13-380
PubMed: 26240308
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Multiple Phytophthora species associated with a single riparian ecosystem in South Africa.</title><author><name sortKey="Nagel, Jan H" sort="Nagel, Jan H" uniqKey="Nagel J" first="Jan H" last="Nagel">Jan H. Nagel</name><affiliation><nlm:affiliation>Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0001, South Africa jan.nagel@fabi.up.ac.z.</nlm:affiliation><wicri:noCountry code="subField">South Africa jan.nagel@fabi.up.ac.z.</wicri:noCountry></affiliation></author><author><name sortKey="Slippers, Bernard" sort="Slippers, Bernard" uniqKey="Slippers B" first="Bernard" last="Slippers">Bernard Slippers</name><affiliation wicri:level="1"><nlm:affiliation>Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0001, South Africa.</nlm:affiliation><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea>Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0001</wicri:regionArea><wicri:noRegion>Pretoria 0001</wicri:noRegion></affiliation></author><author><name sortKey="Wingfield, Michael J" sort="Wingfield, Michael J" uniqKey="Wingfield M" first="Michael J" last="Wingfield">Michael J. Wingfield</name><affiliation wicri:level="1"><nlm:affiliation>Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0001, South Africa.</nlm:affiliation><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea>Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0001</wicri:regionArea><wicri:noRegion>Pretoria 0001</wicri:noRegion></affiliation></author><author><name sortKey="Gryzenhout, Marieka" sort="Gryzenhout, Marieka" uniqKey="Gryzenhout M" first="Marieka" last="Gryzenhout">Marieka Gryzenhout</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Sciences, University of the Free State, Bloemfontein 9300, South Africa.</nlm:affiliation><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea>Department of Plant Sciences, University of the Free State, Bloemfontein 9300</wicri:regionArea><wicri:noRegion>Bloemfontein 9300</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2015">2015 Sep-Oct</date><idno type="RBID">pubmed:26240308</idno><idno type="pmid">26240308</idno><idno type="doi">10.3852/13-380</idno><idno type="wicri:Area/Main/Corpus">000D93</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000D93</idno><idno type="wicri:Area/Main/Curation">000D93</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000D93</idno><idno type="wicri:Area/Main/Exploration">000D93</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Multiple Phytophthora species associated with a single riparian ecosystem in South Africa.</title><author><name sortKey="Nagel, Jan H" sort="Nagel, Jan H" uniqKey="Nagel J" first="Jan H" last="Nagel">Jan H. Nagel</name><affiliation><nlm:affiliation>Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0001, South Africa jan.nagel@fabi.up.ac.z.</nlm:affiliation><wicri:noCountry code="subField">South Africa jan.nagel@fabi.up.ac.z.</wicri:noCountry></affiliation></author><author><name sortKey="Slippers, Bernard" sort="Slippers, Bernard" uniqKey="Slippers B" first="Bernard" last="Slippers">Bernard Slippers</name><affiliation wicri:level="1"><nlm:affiliation>Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0001, South Africa.</nlm:affiliation><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea>Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0001</wicri:regionArea><wicri:noRegion>Pretoria 0001</wicri:noRegion></affiliation></author><author><name sortKey="Wingfield, Michael J" sort="Wingfield, Michael J" uniqKey="Wingfield M" first="Michael J" last="Wingfield">Michael J. Wingfield</name><affiliation wicri:level="1"><nlm:affiliation>Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0001, South Africa.</nlm:affiliation><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea>Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0001</wicri:regionArea><wicri:noRegion>Pretoria 0001</wicri:noRegion></affiliation></author><author><name sortKey="Gryzenhout, Marieka" sort="Gryzenhout, Marieka" uniqKey="Gryzenhout M" first="Marieka" last="Gryzenhout">Marieka Gryzenhout</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Sciences, University of the Free State, Bloemfontein 9300, South Africa.</nlm:affiliation><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea>Department of Plant Sciences, University of the Free State, Bloemfontein 9300</wicri:regionArea><wicri:noRegion>Bloemfontein 9300</wicri:noRegion></affiliation></author></analytic><series><title level="j">Mycologia</title><idno type="ISSN">0027-5514</idno></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>DNA, Fungal (genetics)</term><term>DNA, Intergenic (genetics)</term><term>Ecosystem (MeSH)</term><term>Phylogeny (MeSH)</term><term>Phytophthora (classification)</term><term>Phytophthora (genetics)</term><term>Rivers (MeSH)</term><term>South Africa (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN fongique (génétique)</term><term>ADN intergénique (génétique)</term><term>Phylogenèse (MeSH)</term><term>Phytophthora (classification)</term><term>Phytophthora (génétique)</term><term>Rivières (MeSH)</term><term>République d'Afrique du Sud (MeSH)</term><term>Écosystème (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Fungal</term><term>DNA, Intergenic</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>South Africa</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN fongique</term><term>ADN intergénique</term><term>Phytophthora</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Ecosystem</term><term>Phylogeny</term><term>Rivers</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Phylogenèse</term><term>Rivières</term><term>République d'Afrique du Sud</term><term>Écosystème</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Afrique du Sud</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The diversity of Phytophthora spp. in rivers and riparian ecosystems has received considerable international attention, although little such research has been conducted in South Africa. This study determined the diversity of Phytophthora spp. within a single river in Gauteng province of South Africa. Samples were collected over 1 y including biweekly river baiting with Rhododendron indicum leaves. Phytophthora isolates were identified with phylogenetic analyses of sequences for the internal transcribed spacer (ITS) region of the ribosomal DNA and the mitochondrial cytochrome oxidase c subunit I (coxI) gene. Eight Phytophthora spp. were identified, including a new taxon, P. taxon Sisulu-river, and two hybrid species from Cooke's ITS clade 6. Of these, species from Clade 6 were the most abundant, including P. chlamydospora and P. lacustris. Species residing in Clade 2 also were encountered, including P. multivora, P. plurivora and P. citrophthora. The detection of eight species in this investigation of Phytophthora diversity in a single riparian river ecosystem in northern South Africa adds to the known diversity of this genus in South Africa and globally. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">26240308</PMID><DateCompleted><Year>2015</Year><Month>11</Month><Day>30</Day></DateCompleted><DateRevised><Year>2015</Year><Month>10</Month><Day>22</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0027-5514</ISSN><JournalIssue CitedMedium="Print"><Volume>107</Volume><Issue>5</Issue><PubDate><MedlineDate>2015 Sep-Oct</MedlineDate></PubDate></JournalIssue><Title>Mycologia</Title><ISOAbbreviation>Mycologia</ISOAbbreviation></Journal><ArticleTitle>Multiple Phytophthora species associated with a single riparian ecosystem in South Africa.</ArticleTitle><Pagination><MedlinePgn>915-25</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3852/13-380</ELocationID><Abstract><AbstractText>The diversity of Phytophthora spp. in rivers and riparian ecosystems has received considerable international attention, although little such research has been conducted in South Africa. This study determined the diversity of Phytophthora spp. within a single river in Gauteng province of South Africa. Samples were collected over 1 y including biweekly river baiting with Rhododendron indicum leaves. Phytophthora isolates were identified with phylogenetic analyses of sequences for the internal transcribed spacer (ITS) region of the ribosomal DNA and the mitochondrial cytochrome oxidase c subunit I (coxI) gene. Eight Phytophthora spp. were identified, including a new taxon, P. taxon Sisulu-river, and two hybrid species from Cooke's ITS clade 6. Of these, species from Clade 6 were the most abundant, including P. chlamydospora and P. lacustris. Species residing in Clade 2 also were encountered, including P. multivora, P. plurivora and P. citrophthora. The detection of eight species in this investigation of Phytophthora diversity in a single riparian river ecosystem in northern South Africa adds to the known diversity of this genus in South Africa and globally. </AbstractText><CopyrightInformation>© 2015 by The Mycological Society of America.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Nagel</LastName><ForeName>Jan H</ForeName><Initials>JH</Initials><AffiliationInfo><Affiliation>Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0001, South Africa jan.nagel@fabi.up.ac.z.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Slippers</LastName><ForeName>Bernard</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0001, South Africa.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wingfield</LastName><ForeName>Michael J</ForeName><Initials>MJ</Initials><AffiliationInfo><Affiliation>Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0001, South Africa.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gryzenhout</LastName><ForeName>Marieka</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Department of Plant Sciences, University of the Free State, Bloemfontein 9300, South Africa.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2015</Year><Month>08</Month><Day>03</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Mycologia</MedlineTA><NlmUniqueID>0400764</NlmUniqueID><ISSNLinking>0027-5514</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004271">DNA, Fungal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D021901">DNA, Intergenic</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D004271" MajorTopicYN="N">DNA, Fungal</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D021901" MajorTopicYN="N">DNA, Intergenic</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017753" MajorTopicYN="Y">Ecosystem</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010838" MajorTopicYN="N">Phytophthora</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D045483" MajorTopicYN="Y">Rivers</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D013019" MajorTopicYN="N" Type="Geographic">South Africa</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Clade 6</Keyword><Keyword MajorTopicYN="N">P. citrophthora</Keyword><Keyword MajorTopicYN="N">P. lacustris</Keyword><Keyword MajorTopicYN="N">P. multivora</Keyword><Keyword MajorTopicYN="N">P. plurivora</Keyword><Keyword MajorTopicYN="N">P. taxon Sisulu-river</Keyword><Keyword MajorTopicYN="N">Phytophthora chlamydospora</Keyword><Keyword MajorTopicYN="N">South Africa</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2013</Year><Month>11</Month><Day>29</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2015</Year><Month>06</Month><Day>19</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2015</Year><Month>8</Month><Day>5</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2015</Year><Month>8</Month><Day>5</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2015</Year><Month>12</Month><Day>15</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">26240308</ArticleId><ArticleId IdType="pii">13-380</ArticleId><ArticleId IdType="doi">10.3852/13-380</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Afrique du Sud</li></country></list><tree><noCountry><name sortKey="Nagel, Jan H" sort="Nagel, Jan H" uniqKey="Nagel J" first="Jan H" last="Nagel">Jan H. Nagel</name></noCountry><country name="Afrique du Sud"><noRegion><name sortKey="Slippers, Bernard" sort="Slippers, Bernard" uniqKey="Slippers B" first="Bernard" last="Slippers">Bernard Slippers</name></noRegion><name sortKey="Gryzenhout, Marieka" sort="Gryzenhout, Marieka" uniqKey="Gryzenhout M" first="Marieka" last="Gryzenhout">Marieka Gryzenhout</name><name sortKey="Wingfield, Michael J" sort="Wingfield, Michael J" uniqKey="Wingfield M" first="Michael J" last="Wingfield">Michael J. Wingfield</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PhytophthoraV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000D32 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000D32 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= PhytophthoraV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:26240308
|texte= Multiple Phytophthora species associated with a single riparian ecosystem in South Africa.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:26240308" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a PhytophthoraV1
| This area was generated with Dilib version V0.6.38. |  |